Index

_

__call__() (pyspeckit.spectrum.baseline.Baseline method) __init__() (pyspeckit.spectrum.baseline.Baseline method)

__module__ (pyspeckit.spectrum.baseline.Baseline attribute)

A

add_fitter() (pyspeckit.spectrum.fitters.Registry method) add_sliders() (pyspeckit.spectrum.fitters.Specfit method) add_to_registry() (in module pyspeckit.spectrum.models.hydrogen) ammonia() (in module pyspeckit.spectrum.models.ammonia) analytic_centroids() (pyspeckit.spectrum.models.model.SpectralModel method) analytic_fwhm() (pyspeckit.spectrum.models.model.SpectralModel method) analytic_integral() (pyspeckit.spectrum.models.model.SpectralModel method) annotate() (pyspeckit.spectrum.baseline.Baseline method) (pyspeckit.spectrum.fitters.Specfit method)

annotations() (pyspeckit.spectrum.models.model.SpectralModel method) aper_world2pix() (in module pyspeckit.cubes.cubes) as_unit() (pyspeckit.spectrum.units.SpectroscopicAxis method) aval_dict (in module pyspeckit.spectrum.models.hcn) average() (pyspeckit.spectrum.classes.ObsBlock method) average_IF() (in module pyspeckit.spectrum.readers.gbt) average_pols() (in module pyspeckit.spectrum.readers.gbt)

B

Baseline (class in pyspeckit.spectrum.baseline) baseline_cube() (in module pyspeckit.cubes.cubes) BigSpectrum_to_NH3dict() (in module pyspeckit.wrappers.fitnh3)

blfunc_generator() (in module pyspeckit.cubes.cubes) button2action() (pyspeckit.spectrum.baseline.Baseline method) button3action() (pyspeckit.spectrum.baseline.Baseline method) (pyspeckit.spectrum.fitters.Specfit method)

C

cdelt() (pyspeckit.spectrum.units.SpectroscopicAxis method) circle() (pyspeckit.cubes.mapplot.MapPlotter method) class_to_obsblocks() (in module pyspeckit.spectrum.readers.read_class) class_to_spectra() (in module pyspeckit.spectrum.readers.read_class) clear() (pyspeckit.spectrum.fitters.Specfit method) clear_all_connections() (pyspeckit.spectrum.fitters.Specfit method) clear_highlights() (pyspeckit.spectrum.fitters.Specfit method) clearlegend() (pyspeckit.spectrum.baseline.Baseline method) click() (pyspeckit.cubes.mapplot.MapPlotter method) component_integrals() (pyspeckit.spectrum.models.model.SpectralModel method) components() (pyspeckit.spectrum.models.model.SpectralModel method)

computed_centroid() (pyspeckit.spectrum.models.model.SpectralModel method) convert_to_unit() (pyspeckit.spectrum.units.SpectroscopicAxis method) coord_to_x() (pyspeckit.spectrum.units.SpectroscopicAxis method) coords_in_image() (in module pyspeckit.cubes.cubes) copy() (pyspeckit.cubes.mapplot.MapPlotter method) (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.baseline.Baseline method) (pyspeckit.spectrum.classes.Spectrum method) (pyspeckit.spectrum.fitters.Specfit method) count_integrations() (in module pyspeckit.spectrum.readers.gbt) crop() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.baseline.Baseline method) (pyspeckit.spectrum.classes.Spectrum method) (pyspeckit.spectrum.fitters.Specfit method) Cube (class in pyspeckit.cubes.SpectralCube) cube_fit() (in module pyspeckit.wrappers.cube_fit) cubes (pyspeckit.cubes.SpectralCube.Cube attribute) CubeStack (class in pyspeckit.cubes.SpectralCube)

D

dcmeantsys() (in module pyspeckit.spectrum.readers.gbt) downsample() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.baseline.Baseline method) (pyspeckit.spectrum.classes.Spectrum method) (pyspeckit.spectrum.fitters.Specfit method)

downsample_1d() (in module pyspeckit.spectrum.readers.read_class)

E

EQW() (pyspeckit.spectrum.fitters.Specfit method) event_manager() (pyspeckit.spectrum.fitters.Specfit method)

extract_aperture() (in module pyspeckit.cubes.cubes)

F

find_equivalencies() (pyspeckit.spectrum.units.SpectroscopicAxis class method) find_feeds() (in module pyspeckit.spectrum.readers.gbt) find_lines() (in module pyspeckit.spectrum.models.hydrogen) find_matched_freqs() (in module pyspeckit.spectrum.readers.gbt) find_pols() (in module pyspeckit.spectrum.readers.gbt) firstclick_guess() (pyspeckit.spectrum.fitters.Specfit method) fit() (pyspeckit.spectrum.baseline.Baseline method) fit_gaussians_to_simple_spectra() (in module pyspeckit.wrappers.fit_gaussians_to_simple_spectra) fiteach() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectra method) fitnh3() (in module pyspeckit.wrappers.fitnh3) fitnh3tkin() (in module pyspeckit.wrappers.fitnh3)

fitter() (pyspeckit.spectrum.models.model.SpectralModel method) flatten_header() (in module pyspeckit.cubes.cubes) flux (pyspeckit.cubes.SpectralCube.Cube attribute) (pyspeckit.spectrum.classes.Spectrum attribute) formaldehyde() (in module pyspeckit.spectrum.models.formaldehyde) formaldehyde_pyradex() (in module pyspeckit.spectrum.models.formaldehyde) formaldehyde_radex() (in module pyspeckit.spectrum.models.formaldehyde) formaldehyde_radex_orthopara_temp() (in module pyspeckit.spectrum.models.formaldehyde) formaldehyde_radex_tau() (in module pyspeckit.spectrum.models.formaldehyde) from_hdu() (pyspeckit.cubes.SpectralCube.Cube class method) (pyspeckit.spectrum.classes.Spectrum class method) from_spectrum1d() (pyspeckit.cubes.SpectralCube.Cube class method) (pyspeckit.spectrum.classes.Spectrum class method) fullsizemodel() (pyspeckit.spectrum.fitters.Specfit method)

G

gaussian() (in module pyspeckit.spectrum.models.inherited_gaussfitter) gaussian_fitter() (in module pyspeckit.spectrum.models.inherited_gaussfitter) gaussian_integral() (in module pyspeckit.spectrum.models.inherited_gaussfitter) gaussian_line() (in module pyspeckit.spectrum.models.modelgrid) gaussian_vheight_fitter() (in module pyspeckit.spectrum.models.inherited_gaussfitter) GBTSession (class in pyspeckit.spectrum.readers.gbt) GBTTarget (class in pyspeckit.spectrum.readers.gbt) get_apspec() (pyspeckit.cubes.SpectralCube.Cube method) get_components() (pyspeckit.spectrum.fitters.Specfit method) get_emcee() (pyspeckit.spectrum.fitters.Specfit method) get_emcee_ensemblesampler() (pyspeckit.spectrum.models.model.SpectralModel method) get_emcee_sampler() (pyspeckit.spectrum.models.model.SpectralModel method)

get_full_model() (pyspeckit.spectrum.fitters.Specfit method) get_model() (pyspeckit.spectrum.baseline.Baseline method) (pyspeckit.spectrum.fitters.Specfit method) get_model_frompars() (pyspeckit.spectrum.fitters.Specfit method) get_model_xlimits() (pyspeckit.spectrum.fitters.Specfit method) get_modelcube() (pyspeckit.cubes.SpectralCube.Cube method) get_pymc() (pyspeckit.spectrum.fitters.Specfit method) (pyspeckit.spectrum.models.model.SpectralModel method) get_spectrum() (pyspeckit.cubes.SpectralCube.Cube method) getlines() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method) getspec() (in module pyspeckit.cubes.cubes) getspec_reg() (in module pyspeckit.cubes.cubes) gi8_dicho() (in module pyspeckit.spectrum.readers.read_class) guesspeakwidth() (pyspeckit.spectrum.fitters.Specfit method)

H

hcn_radex() (in module pyspeckit.spectrum.models.hcn) highlight_fitregion() (pyspeckit.spectrum.fitters.Specfit method) hill5_model() (in module pyspeckit.spectrum.models.hill5infall) history_fitpars() (pyspeckit.spectrum.fitters.Specfit method) hydrogen_fitter() (in module pyspeckit.spectrum.models.hydrogen) hydrogen_model() (in module pyspeckit.spectrum.models.hydrogen) hyperfine() (pyspeckit.spectrum.models.hyperfine.hyperfinemodel method) hyperfine_addbackground() (pyspeckit.spectrum.models.hyperfine.hyperfinemodel method)

hyperfine_amp() (pyspeckit.spectrum.models.hyperfine.hyperfinemodel method) hyperfine_tau() (pyspeckit.spectrum.models.hyperfine.hyperfinemodel method) hyperfine_tau_total() (pyspeckit.spectrum.models.hyperfine.hyperfinemodel method) hyperfine_varyhf() (pyspeckit.spectrum.models.hyperfine.hyperfinemodel method) hyperfine_varyhf_amp() (pyspeckit.spectrum.models.hyperfine.hyperfinemodel method) hyperfine_varyhf_amp_width() (pyspeckit.spectrum.models.hyperfine.hyperfinemodel method) hyperfinemodel (class in pyspeckit.spectrum.models.hyperfine)

I

identify_samplers() (in module pyspeckit.spectrum.readers.gbt) in_range() (pyspeckit.spectrum.units.SpectroscopicAxis method) integ() (in module pyspeckit.cubes.cubes)

integral() (pyspeckit.spectrum.fitters.Specfit method) (pyspeckit.spectrum.models.model.SpectralModel method) interpnans() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method)

J

jfunc() (in module pyspeckit.spectrum.models.hill5infall)

L

LazyItem (class in pyspeckit.spectrum.readers.read_class) line_model_2par() (in module pyspeckit.spectrum.models.modelgrid) line_params_2D() (in module pyspeckit.spectrum.models.modelgrid) list_targets() (in module pyspeckit.spectrum.readers.gbt) lmfitfun() (pyspeckit.spectrum.models.model.SpectralModel method) lmfitter() (pyspeckit.spectrum.models.model.SpectralModel method) load_fits() (pyspeckit.cubes.SpectralCube.Cube method)

load_model_fit() (pyspeckit.cubes.SpectralCube.Cube method) load_spectral_cube() (pyspeckit.cubes.SpectralCube.Cube method) load_target() (pyspeckit.spectrum.readers.gbt.GBTSession method) logp() (pyspeckit.spectrum.models.model.SpectralModel method) lorentzian() (in module pyspeckit.spectrum.models.inherited_lorentzian) lorentzian_fitter() (in module pyspeckit.spectrum.models.inherited_lorentzian)

M

make_axis() (in module pyspeckit.spectrum.readers.read_class) make_dxarr() (pyspeckit.spectrum.units.SpectroscopicAxis method) make_n2hp_fitter() (in module pyspeckit.wrappers.n2hp_wrapper) makeplane() (pyspeckit.cubes.mapplot.MapPlotter method) mapplot() (pyspeckit.cubes.mapplot.MapPlotter method) MapPlotter (class in pyspeckit.cubes.mapplot) mask (pyspeckit.spectrum.fitters.Specfit attribute) mask_sliced (pyspeckit.spectrum.fitters.Specfit attribute)

measure() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method) measure_approximate_fwhm() (pyspeckit.spectrum.fitters.Specfit method) model_mask() (pyspeckit.spectrum.fitters.Specfit method) momenteach() (pyspeckit.cubes.SpectralCube.Cube method) moments() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method) (pyspeckit.spectrum.fitters.Specfit method) mpfitfun() (pyspeckit.spectrum.models.model.SpectralModel method) multifit() (pyspeckit.spectrum.fitters.Specfit method)

N

n2hp_radex() (in module pyspeckit.spectrum.models.n2hp)

n_modelfunc() (pyspeckit.spectrum.models.model.SpectralModel method)

O

ObsBlock (class in pyspeckit.spectrum.classes) open_1d_fits() (in module pyspeckit.spectrum.readers.fits_reader) open_1d_pyfits() (in module pyspeckit.spectrum.readers.fits_reader)

open_1d_txt() (in module pyspeckit.spectrum.readers.txt_reader) open_hdf5() (in module pyspeckit.spectrum.readers.hdf5_reader) optimal_chi2() (pyspeckit.spectrum.fitters.Specfit method)

P

parse_hdf5_header() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method) parse_header() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method) parse_text_header() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method) peakbgfit() (pyspeckit.spectrum.fitters.Specfit method) plane_smooth() (in module pyspeckit.cubes.cubes) plot_apspec() (pyspeckit.cubes.SpectralCube.Cube method) plot_baseline() (pyspeckit.spectrum.baseline.Baseline method) plot_components() (pyspeckit.spectrum.fitters.Specfit method) plot_fit() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.fitters.Specfit method) plot_model() (pyspeckit.spectrum.fitters.Specfit method) plot_nh3() (in module pyspeckit.wrappers.fitnh3) plot_spectrum() (pyspeckit.cubes.mapplot.MapPlotter method) (pyspeckit.cubes.SpectralCube.Cube method) ploteach() (pyspeckit.spectrum.classes.Spectra method) plotresiduals() (pyspeckit.spectrum.fitters.Specfit method) plotter_override() (in module pyspeckit.wrappers.fitnh3) print_fit() (pyspeckit.spectrum.fitters.Specfit method) print_timing() (in module pyspeckit.spectrum.readers.read_class) pyspeckit.cubes.cubes (module) pyspeckit.cubes.mapplot (module) pyspeckit.cubes.SpectralCube (module) pyspeckit.spectrum (module) pyspeckit.spectrum.__init__ (module) pyspeckit.spectrum.baseline (module) pyspeckit.spectrum.classes (module) pyspeckit.spectrum.fitters (module), [1] pyspeckit.spectrum.measurements (module)

pyspeckit.spectrum.models (module) pyspeckit.spectrum.models.ammonia (module) pyspeckit.spectrum.models.fitter (module) pyspeckit.spectrum.models.formaldehyde (module) pyspeckit.spectrum.models.hcn (module) pyspeckit.spectrum.models.hill5infall (module) pyspeckit.spectrum.models.hydrogen (module) pyspeckit.spectrum.models.hyperfine (module) pyspeckit.spectrum.models.inherited_gaussfitter (module) pyspeckit.spectrum.models.inherited_lorentzian (module) pyspeckit.spectrum.models.inherited_voigtfitter (module) pyspeckit.spectrum.models.model (module) pyspeckit.spectrum.models.modelgrid (module) pyspeckit.spectrum.models.n2hp (module) pyspeckit.spectrum.readers.fits_reader (module) pyspeckit.spectrum.readers.gbt (module) pyspeckit.spectrum.readers.hdf5_reader (module) pyspeckit.spectrum.readers.read_class (module) pyspeckit.spectrum.readers.txt_reader (module) pyspeckit.spectrum.units (module) pyspeckit.wrappers (module) pyspeckit.wrappers.cube_fit (module) pyspeckit.wrappers.fit_gaussians_to_simple_spectra (module) pyspeckit.wrappers.fitnh3 (module) pyspeckit.wrappers.n2hp_wrapper (module)

R

read_class() (in module pyspeckit.spectrum.readers.read_class) read_echelle() (in module pyspeckit.spectrum.readers.fits_reader) read_gbt_scan() (in module pyspeckit.spectrum.readers.gbt) read_gbt_target() (in module pyspeckit.spectrum.readers.gbt) reduce() (pyspeckit.spectrum.readers.gbt.GBTTarget method) reduce_all() (pyspeckit.spectrum.readers.gbt.GBTSession method) reduce_gbt_target() (in module pyspeckit.spectrum.readers.gbt) reduce_nod() (in module pyspeckit.spectrum.readers.gbt) reduce_target() (pyspeckit.spectrum.readers.gbt.GBTSession method) reduce_totalpower() (in module pyspeckit.spectrum.readers.gbt)

refit() (pyspeckit.spectrum.fitters.Specfit method) refresh() (pyspeckit.cubes.mapplot.MapPlotter method) refX_units (pyspeckit.spectrum.units.SpectroscopicAxis attribute) register_fitter() (pyspeckit.spectrum.fitters.Specfit method) register_reader() (in module pyspeckit.spectrum) (in module pyspeckit.spectrum.__init__) register_writer() (in module pyspeckit.spectrum) (in module pyspeckit.spectrum.__init__) Registry (class in pyspeckit.spectrum.fitters) relative_strength_total_degeneracy (in module pyspeckit.spectrum.models.n2hp) round_to_resolution() (in module pyspeckit.spectrum.readers.gbt) rrl() (in module pyspeckit.spectrum.models.hydrogen)

S

savefit() (pyspeckit.spectrum.baseline.Baseline method) (pyspeckit.spectrum.fitters.Specfit method) selectregion() (pyspeckit.spectrum.fitters.Specfit method) selectregion_interactive() (pyspeckit.spectrum.fitters.Specfit method) set_apspec() (pyspeckit.cubes.SpectralCube.Cube method) set_basespec_frompars() (pyspeckit.spectrum.baseline.Baseline method) set_spectofit() (pyspeckit.spectrum.baseline.Baseline method) set_spectrum() (pyspeckit.cubes.SpectralCube.Cube method) set_unit() (pyspeckit.spectrum.units.SpectroscopicAxis method) seterrspec() (pyspeckit.spectrum.fitters.Specfit method) setfitspec() (pyspeckit.spectrum.fitters.Specfit method) shape (pyspeckit.cubes.SpectralCube.Cube attribute) (pyspeckit.spectrum.classes.Spectrum attribute) shift_pars() (pyspeckit.spectrum.fitters.Specfit method) show_fit_param() (pyspeckit.cubes.SpectralCube.Cube method) show_moment() (pyspeckit.cubes.SpectralCube.Cube method) sigref() (in module pyspeckit.spectrum.readers.gbt) simple_txt() (in module pyspeckit.spectrum.readers.txt_reader)

slice() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method) slope() (pyspeckit.spectrum.models.model.SpectralModel method) smooth() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.ObsBlock method) (pyspeckit.spectrum.classes.Spectra method) (pyspeckit.spectrum.classes.Spectrum method) speccen_header() (in module pyspeckit.cubes.cubes) Specfit (class in pyspeckit.spectrum.fitters) Spectra (class in pyspeckit.spectrum.classes) spectral_smooth() (in module pyspeckit.cubes.cubes) SpectralModel (class in pyspeckit.spectrum.models.model) SpectroscopicAxes (class in pyspeckit.spectrum.units) SpectroscopicAxis (class in pyspeckit.spectrum.units) Spectrum (class in pyspeckit.spectrum.classes) start_interactive() (pyspeckit.spectrum.fitters.Specfit method) stats() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method) subcube() (in module pyspeckit.cubes.cubes) subimage_integ() (in module pyspeckit.cubes.cubes)

T

tests() (in module pyspeckit.spectrum.readers.read_class)

totalpower() (in module pyspeckit.spectrum.readers.gbt)

U

umax() (pyspeckit.spectrum.units.SpectroscopicAxis method) umin() (pyspeckit.spectrum.units.SpectroscopicAxis method) uniq() (in module pyspeckit.spectrum.readers.gbt)

unit (pyspeckit.cubes.SpectralCube.Cube attribute) (pyspeckit.spectrum.classes.Spectrum attribute) units (pyspeckit.cubes.SpectralCube.Cube attribute) (pyspeckit.spectrum.classes.Spectrum attribute) (pyspeckit.spectrum.units.SpectroscopicAxis attribute) unsubtract() (pyspeckit.spectrum.baseline.Baseline method)

V

validate_unit() (pyspeckit.spectrum.units.SpectroscopicAxis class method) voigt() (in module pyspeckit.spectrum.models.inherited_voigtfitter) voigt_fitter() (in module pyspeckit.spectrum.models.inherited_voigtfitter)

voigt_fwhm() (in module pyspeckit.spectrum.models.inherited_voigtfitter) voigt_moments() (in module pyspeckit.spectrum.models.inherited_voigtfitter)

W

write() (pyspeckit.cubes.SpectralCube.Cube method) (pyspeckit.spectrum.classes.Spectrum method) write_cube() (pyspeckit.cubes.SpectralCube.Cube method)

write_fit() (pyspeckit.cubes.SpectralCube.Cube method)

X

x_to_coord() (pyspeckit.spectrum.units.SpectroscopicAxis method)

x_to_pix() (pyspeckit.spectrum.units.SpectroscopicAxis method)